Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M16 RNAprocessing Mitochondrion_UniqueNum	BreastC_M16 RNAprocessing Mitochondrion_pVal	BreastC_M16 RNAprocessing Mitochondrion_Unique	BreastC_M26 Chr17q21-25_UniqueNum	BreastC_M26 Chr17q21-25_pVal	BreastC_M26 Chr17q21-25_Unique
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP	0		7.30765145521e-05	34	0.000146152296557	AP2S1|BAX|CNOT3|CNPY3|DMPK|EPN1|GRWD1|GYS1|INTS1|KDELR1|MAD1L1|MAFK|MBOAT7|MRPS12|NFKBIB|NOSIP|NR1H2|NUCB1|NUDC|PAF1|PAK4|PPP1R13L|PSMD8|RUVBL2|SIRT2|SIX5|SLC1A5|SMURF1|SNRPD2|STRN4|TSEN34|U2AF2|ZNF444|ZNF580	20	7.32547258177e-10	ANKRD40|CASKIN2|COX11|ITGA3|KAT7|LRRC59|LUC7L3|NME1|PCTP|PDK2|PHB|RSAD1|SLC35B1|SNF8|SPAG9|SPATA20|SPOP|UBE2Z|UTP18|XYLT2
Human Breast_Thuerigen06_512genes_TGFb (16622258-SuppTable2)	0		4.39620962103e-05	50	2.98721304113e-06	ABCD1|AGTRAP|ARAF|B4GALT2|BAK1|BICRA|BMS1|C7ORF50|CARM1|CCDC22|CCM2|CCND3|COQ8B|CYTH2|DDX56|DNAAF5|FAM219A|FBXO17|GBF1|KDELR3|KEAP1|LRP5|MCUR1|MRPL2|MTOR|MUL1|NMNAT1|NOC2L|PAFAH1B3|PAFAH2|PEX6|PKN3|PNKP|PPIL1|PRKCZ|PTPRU|RASSF1|RBM10|SF3A2|SLC6A8|SMG9|SOX13|SRF|TBCB|THAP8|TIMM17B|TRIP10|UBA1|WRAP73|ZNF335	16	8.49369793795e-05	AKAP1|ASPSCR1|C17ORF62|DAPK2|EXOC7|KBTBD2|NT5C|PCTP|PHB|RAD51C|RPTOR|SGSH|SMURF2|SUMO2|SUPT4H1|TBC1D16
LI_DCP2_BOUND_MRNA	0		0.000116330822168	15	0.00021809190363	AP2S1|FAM50A|HSD17B10|IDH3G|MAP2K2|MRPS12|MRTO4|NDUFA13|NDUFB7|NDUFS7|NOL7|NQO2|RUVBL2|WDR74|ZNF593	8	1.45697407064e-05	CENPX|DUS1L|JMJD6|MRPL12|NARF|PSMC5|SAP30BP|TACO1
PURBEY_TARGETS_OF_CTBP1_AND_SATB1_DN	0		0.000399595033758	23	0.00039461158309	ACOT8|AIFM2|AIMP2|ASNA1|CCDC22|FARSA|GCDH|GP9|JUND|KHSRP|MAP2K2|MED16|PAF1|RAVER1|SCAMP4|SIX5|SRPRB|TMED1|TMEM222|U2AF1|VWA1|WDR46|ZSWIM3	9	0.000404578484425	ACOXL|AMZ2|ANKRD40|CDC42EP4|EXOC7|FN3KRP|PARD6A|RECQL5|SUPT4H1
cellular protein catabolic process [GoID:GO:0044257; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	0		0.000690857843197	63	0.000411022886931	ANXA2|AP2A1|AP2M1|AP2S1|ARAF|ATP13A2|AUP1|BAG6|BTBD2|CBLC|CCDC22|CDC34|CLPP|CUL7|DDA1|DNAJB12|DVL1|FBXL18|FBXL19|FURIN|FZR1|GET4|GIPC1|GNA12|GSK3B|HECTD3|HM13|HSP90AB1|HSPA1A|HSPBP1|HTRA2|KEAP1|LONP1|PARK7|PINK1|PML|PPP1R11|PRKACA|PSMC4|PSMD2|PSMD8|PTPN23|RAD23A|RANBP3|RHBDD1|RNF5|RNF8|RNF24|RNF126|RNF216|SGTA|SIRT2|SMURF1|TMEM259|TRIM39|UBA1|UBE2J2|UBE4B|UBXN11|UQCC2|USP42|WDR91|ZFAND2A	19	0.000970692799463	ANAPC11|CCDC47|CLTC|CSNK1D|ERCC8|KCTD2|NPLOC4|PSMC5|PSMD12|SMURF2|SNF8|SPOP|SUMO2|TLK2|TOM1L1|UBE2Z|USP6|USP32|USP36
intracellular ribonucleoprotein complex [GoID:GO:0030529; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		0.000154877554463	79	2.49724416897e-06	ABCF1|ACTN4|AGO1|AURKAIP1|BMS1|BTBD2|CACTIN|CALR|CNOT3|DDX41|EEFSEC|EIF4G1|GADD45GIP1|HNRNPAB|HNRNPUL1|HSD17B10|HSPA1A|ILF3|KHSRP|KRI1|LSM2|LSM7|MOV10|MRPL2|MRPL4|MRPL11|MRPL14|MRPL20|MRPL21|MRPL34|MRPL54|MRPS12|MRPS18A|MRPS18B|MRPS25|NAA10|NAT10|NDUFA7|NHP2|NOC2L|PIH1D1|PPAN|PPIL1|PPP1R8|PQBP1|PRPF31|PWP2|RAC1|RBM14|RIOK1|RNF113A|RPL7L1|RPL36|RPL41|RPP21|RPP25|RPS8|RPS10|RPS15|RRP1|RRP36|RUVBL2|SAMD4B|SF3A2|SF3A3|SNRPC|SNRPD2|SUGP1|U2AF1|U2AF2|UPF1|WDR46|WDR74|WDR83|XAB2|XPO5|YBX1|YTHDF2|ZNF593	22	0.000307257864757	AAMP|DDX5|DHX40|EIF4A3|FTSJ3|JMJD6|LUC7L3|MCRIP1|MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|MSI2|RPL38|RPTOR|SRP68|SRSF1|UNK|UTP18|ZRSR1
mitochondrial translational elongation [GoID:GO:0070125; evidenceTypes:IBA|TAS]	0		0.000650798017792	14	0.000564395250389	AURKAIP1|GADD45GIP1|MRPL2|MRPL4|MRPL11|MRPL14|MRPL20|MRPL21|MRPL34|MRPL54|MRPS12|MRPS18A|MRPS18B|MRPS25	6	0.000737200785195	MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23
mitochondrial translational termination [GoID:GO:0070126; evidenceTypes:IBA|TAS]	0		0.000779152873159	14	0.00072223322145	AURKAIP1|GADD45GIP1|MRPL2|MRPL4|MRPL11|MRPL14|MRPL20|MRPL21|MRPL34|MRPL54|MRPS12|MRPS18A|MRPS18B|MRPS25	6	0.000836072524867	MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23
protein catabolic process [GoID:GO:0030163; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	0		0.000381023265179	73	0.000489206864941	ABHD17A|ACE|ANXA2|AP2A1|AP2M1|AP2S1|ARAF|ATG7|ATP13A2|AUP1|BAG6|BTBD2|CBLC|CCDC22|CDC34|CLPP|CUL7|DDA1|DNAJB12|DVL1|FBXL18|FBXL19|FURIN|FZR1|GET4|GIPC1|GNA12|GSK3B|HECTD3|HM13|HSP90AB1|HSPA1A|HSPBP1|HTRA2|KEAP1|LONP1|LYPLA2|MTOR|NDUFA13|OAZ1|PACSIN3|PARK7|PIN1|PINK1|PML|PPP1R11|PRKACA|PSMC4|PSMD2|PSMD8|PTPN23|RAD23A|RANBP3|RHBDD1|RNF5|RNF8|RNF24|RNF126|RNF216|SGTA|SIRT2|SMURF1|TMEM259|TRIM39|UBA1|UBE2J2|UBE4B|UBXN11|UQCC2|USE1|USP42|WDR91|ZFAND2A	23	0.000272839665418	ANAPC11|CCDC47|CLTC|CSNK1D|ERCC8|GGA3|HGS|KCTD2|NPLOC4|PHB|PSMC5|PSMD12|SGSH|SMURF2|SNF8|SPOP|SUMO2|TLK2|TOM1L1|UBE2Z|USP6|USP32|USP36
ribonucleoprotein complex [GoID:GO:1990904; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		0.00016375729912	79	2.90862191174e-06	ABCF1|ACTN4|AGO1|AURKAIP1|BMS1|BTBD2|CACTIN|CALR|CNOT3|DDX41|EEFSEC|EIF4G1|GADD45GIP1|HNRNPAB|HNRNPUL1|HSD17B10|HSPA1A|ILF3|KHSRP|KRI1|LSM2|LSM7|MOV10|MRPL2|MRPL4|MRPL11|MRPL14|MRPL20|MRPL21|MRPL34|MRPL54|MRPS12|MRPS18A|MRPS18B|MRPS25|NAA10|NAT10|NDUFA7|NHP2|NOC2L|PIH1D1|PPAN|PPIL1|PPP1R8|PQBP1|PRPF31|PWP2|RAC1|RBM14|RIOK1|RNF113A|RPL7L1|RPL36|RPL41|RPP21|RPP25|RPS8|RPS10|RPS15|RRP1|RRP36|RUVBL2|SAMD4B|SF3A2|SF3A3|SNRPC|SNRPD2|SUGP1|U2AF1|U2AF2|UPF1|WDR46|WDR74|WDR83|XAB2|XPO5|YBX1|YTHDF2|ZNF593	22	0.000324605976328	AAMP|DDX5|DHX40|EIF4A3|FTSJ3|JMJD6|LUC7L3|MCRIP1|MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|MSI2|RPL38|RPTOR|SRP68|SRSF1|UNK|UTP18|ZRSR1
